Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq1607 104 1e-18 seq7681 98.7 6e-17 seq4607 98.7 6e-17 seq2908 98.7 6e-17 seq2260 95.1 7e-16 seq36652 87.8 1e-13 seq4453 86.0 4e-13 seq1 78.8 5e-11 >seq1607 Length=110441 Score = 104 bits (114), Expect = 1e-18 Identities = 67/71 (94%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 97407 GCCCGTGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 97348 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 97347 GTATTAGCTCT 97337 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 40505 GCCCGTGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTTGGGGTTTGTTGCAT 40446 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 40445 GTATTAGCTCT 40435 >seq7681 Length=12051 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 11847 GCCCGTGTCGACCTTTTATCTAATAAATGCATCCCTTCCGGAAGTCGGGGTTTGTTGCAC 11788 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 11787 GTATTAGCTCT 11777 >seq4607 Length=37173 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 16094 GCCCGTGTCGACCTTTTATCTAATAAATGCATCCCTTTCAGAAGTCGGGGTTTGTTGCAC 16035 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 16034 GTATTAGCTCT 16024 >seq2908 Length=48135 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15972 GCCCGTGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAT 15913 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 15912 GTATTAGCTCT 15902 >seq2260 Length=73924 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||| Sbjct 7134 GCCCGTGTCGACCTTTTATCTAATAAATGCATCCCTTCTAGAAGTCGGGATTTGTTGCAC 7193 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 7194 GTATTAGCTCT 7204 >seq36652 Length=2106 Score = 87.8 bits (96), Expect = 1e-13 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 37 GCCCGTGTCGACCTTTTATCTAATAAATGCATTCCTTCTGGAAGTCGGGGTTTGTTGCAC 96 Query 8905 G 8905 | Sbjct 97 G 97 >seq4453 Length=34979 Score = 86.0 bits (94), Expect = 4e-13 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||| | |||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 14945 GCCCGTATCGACCTTTTATCTAATAAATGGATCCCTTCCGAAAGTCGGGGTTTGTTGCAC 15004 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 15005 GTATTAGCTCT 15015 >seq1 Length=68435666 Score = 78.8 bits (86), Expect = 5e-11 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 8850 TGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGC 8902 |||||||||||||||||||||||| |||||||||| |||| ||||||||||| Sbjct 68164968 TGTTGACCTTTTATCTAATAAATGTATCCCTTCCATAAGTTAGGGTTTGTTGC 68165020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28393597626108