Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq3766 114 5e-22 seq1011 114 5e-22 seq48 109 2e-20 seq18 109 2e-20 >seq3766 Length=56865 Score = 114 bits (126), Expect = 5e-22 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||| ||||| |||||| ||| || | | |||| ||||| | ||||||||| Sbjct 42433 TTTATGATACTTTGCAATTTGTGCCACCCGATGTGCATACAATATGCATGGGATTAGCCA 42492 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| | || || | ||| |||||||||||||| |||||| ||| || Sbjct 42493 CTTCAATGGGATCTTTCATTCTAATTGGAAGAGAAATTACCAAATGTCTAGAATTTCC 42550 >seq1011 Length=254932 Score = 114 bits (126), Expect = 5e-22 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||| || |||||| |||||| || | |||| ||||| ||||||||| || Sbjct 27434 TTTATGATACTATAAAATTTGTGCCACCAGACATACATACAATATGCATAGGATTAGTCG 27375 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||| |||||||| | | || ||| || ||| | |||||||||||| || |||| |||| Sbjct 27374 CTTTAATGGGATTTTTCATTCTGATCAGAGCAAAAATTACCAAACATCCAGCACTCCC 27317 >seq48 Length=1779855 Score = 109 bits (120), Expect = 2e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 45 ATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAA 104 |||| | | |||||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 136294 ATGCATGGAATTAGCCGCTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAA 136353 Query 105 ACGTCTAGCATTCCC 119 | ||||||||||||| Sbjct 136354 ATGTCTAGCATTCCC 136368 >seq18 Length=2465738 Score = 109 bits (120), Expect = 2e-20 Identities = 95/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| || ||||||| || | || | ||||| | |||||||| | Sbjct 1446376 TTTATGATACTATGCAATTTATGCTACCCGATGAGCATATAATATGCATGGGATTAGCTG 1446317 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||| |||||||||| | || ||| || || ||||||||| ||||| ||||||||| || Sbjct 1446316 CTTTAATGGGATCTTTCATTCTGATCAGATGAGAAATTATCAAACATCTAGCATTTCC 1446259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19040826190080