Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_030697.1 Length=9808 Score E Sequences producing significant alignments: (Bits) Value seq834197 86.0 4e-13 seq838390 82.4 5e-12 seq800360 82.4 5e-12 seq769456 82.4 5e-12 seq838597 80.6 2e-11 seq831292 80.6 2e-11 seq790703 80.6 2e-11 seq2008341 78.8 6e-11 seq1973866 78.8 6e-11 seq1972832 78.8 6e-11 seq1280495 78.8 6e-11 seq873125 78.8 6e-11 seq838396 78.8 6e-11 seq838072 78.8 6e-11 seq838048 78.8 6e-11 seq837797 78.8 6e-11 seq833864 78.8 6e-11 seq828349 78.8 6e-11 >seq834197 Length=226 Score = 86.0 bits (94), Expect = 4e-13 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 9655 GTGAGTGAGGGGGATCGGAAGAGCGTCGTGGCGGGGAAAAGTGTAAATCCCGGGGGTCGC 9714 ||||| |||| |||||||||||||||||| ||| || |||||| ||| ||| |||||| Sbjct 150 GTGAGGAAGGGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGC 209 Query 9715 CGGATCCTTaaaaaaaa 9731 || ||| |||||||||| Sbjct 210 CGTATCATTAAAAAAAA 226 >seq838390 Length=239 Score = 82.4 bits (90), Expect = 5e-12 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 9662 AGGGGGATCGGAAGAGCGTCGTGGCGGGGAAAAGTGTAAATCCCGGGGGTCGCCGGATCC 9721 |||| |||||||||||||||||| ||| || |||||| ||| ||| |||||||| ||| Sbjct 70 AGGGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCA 11 Query 9722 TTaaaaaaaa 9731 |||||||||| Sbjct 10 TTAAAAAAAA 1 >seq800360 Length=305 Score = 82.4 bits (90), Expect = 5e-12 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 9664 GGGGATCGGAAGAGCGTCGTGGCGGGGAAAAGTGTAAATCCCGGGGGTCGCCGGATCCTT 9723 ||||||||||||||||||||| ||| || |||||| ||| ||| |||||||| ||| || Sbjct 68 GGGGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT 9 Query 9724 aaaaaaaa 9731 |||||||| Sbjct 8 AAAAAAAA 1 >seq769456 Length=226 Score = 82.4 bits (90), Expect = 5e-12 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 9662 AGGGGGATCGGAAGAGCGTCGTGGCGGGGAAAAGTGTAAATCCCGGGGGTCGCCGGATCC 9721 |||| |||||||||||||||||| ||| || |||||| ||| ||| |||||||| ||| Sbjct 70 AGGGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCA 11 Query 9722 TTaaaaaaaa 9731 |||||||||| Sbjct 10 TTAAAAAAAA 1 >seq838597 Length=231 Score = 80.6 bits (88), Expect = 2e-11 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 9663 GGGGGATCGGAAGAGCGTCGTGGCGGGGAAAAGTGTAAATCCCGGGGGTCGCCGGATCCT 9722 ||| |||||||||||||||||| ||| || |||||| ||| ||| |||||||| ||| | Sbjct 69 GGGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCAT 10 Query 9723 Taaaaaaaa 9731 ||||||||| Sbjct 9 TAAAAAAAA 1 >seq831292 Length=219 Score = 80.6 bits (88), Expect = 2e-11 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 9660 TGAGGGGGATCGGAAGAGCGTCGTGGCGGGGAAAAGTGTAAATCCCGGGGGTCGCCGGAT 9719 |||| | |||||||||||||||||| ||| || |||||| ||| ||| |||||||| || Sbjct 148 TGAGCGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTAT 207 Query 9720 CCTTaaaaaaaa 9731 | |||||||||| Sbjct 208 CATTAAAAAAAA 219 >seq790703 Length=246 Score = 80.6 bits (88), Expect = 2e-11 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 9663 GGGGGATCGGAAGAGCGTCGTGGCGGGGAAAAGTGTAAATCCCGGGGGTCGCCGGATCCT 9722 ||| |||||||||||||||||| ||| || |||||| ||| ||| |||||||| ||| | Sbjct 69 GGGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCAT 10 Query 9723 Taaaaaaaa 9731 ||||||||| Sbjct 9 TAAAAAAAA 1 >seq2008341 Length=442 Score = 78.8 bits (86), Expect = 6e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 9664 GGGGATCGGAAGAGCGTCGTGGCGGGGAAAAGTGTAAATCCCGGGGGTCGCCGGATCCTT 9723 || |||||||||||||||||| ||| || |||||| ||| ||| |||||||| ||| || Sbjct 375 GGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT 434 Query 9724 aaaaaaaa 9731 |||||||| Sbjct 435 AAAAAAAA 442 >seq1973866 Length=243 Score = 78.8 bits (86), Expect = 6e-11 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 9661 GAGGGGGATCGGAAGAGCGTCGTGGCGGGGAAAAGTGTAAATCCCGGGGGTCGCCGGATC 9720 || || |||||||||||||||||| ||| || |||||| ||| ||| |||||||| ||| Sbjct 173 GATGGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATC 232 Query 9721 CTTaaaaaaaa 9731 |||||||||| Sbjct 233 ATTAAAAAAAA 243 >seq1972832 Length=237 Score = 78.8 bits (86), Expect = 6e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 9664 GGGGATCGGAAGAGCGTCGTGGCGGGGAAAAGTGTAAATCCCGGGGGTCGCCGGATCCTT 9723 || |||||||||||||||||| ||| || |||||| ||| ||| |||||||| ||| || Sbjct 170 GGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT 229 Query 9724 aaaaaaaa 9731 |||||||| Sbjct 230 AAAAAAAA 237 >seq1280495 Length=646 Score = 78.8 bits (86), Expect = 6e-11 Identities = 63/76 (83%), Gaps = 4/76 (5%) Strand=Plus/Plus Query 9660 TGAGGGG----GATCGGAAGAGCGTCGTGGCGGGGAAAAGTGTAAATCCCGGGGGTCGCC 9715 ||||||| |||||||||||||||||| ||| || |||||| ||| ||| ||||||| Sbjct 571 TGAGGGGCCGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC 630 Query 9716 GGATCCTTaaaaaaaa 9731 | ||| |||||||||| Sbjct 631 GTATCATTAAAAAAAA 646 >seq873125 Length=9364 Score = 78.8 bits (86), Expect = 6e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 9664 GGGGATCGGAAGAGCGTCGTGGCGGGGAAAAGTGTAAATCCCGGGGGTCGCCGGATCCTT 9723 || |||||||||||||||||| ||| || |||||| ||| ||| |||||||| ||| || Sbjct 9297 GGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT 9356 Query 9724 aaaaaaaa 9731 |||||||| Sbjct 9357 AAAAAAAA 9364 >seq838396 Length=245 Score = 78.8 bits (86), Expect = 6e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 9664 GGGGATCGGAAGAGCGTCGTGGCGGGGAAAAGTGTAAATCCCGGGGGTCGCCGGATCCTT 9723 || |||||||||||||||||| ||| || |||||| ||| ||| |||||||| ||| || Sbjct 68 GGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT 9 Query 9724 aaaaaaaa 9731 |||||||| Sbjct 8 AAAAAAAA 1 >seq838072 Length=238 Score = 78.8 bits (86), Expect = 6e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 9664 GGGGATCGGAAGAGCGTCGTGGCGGGGAAAAGTGTAAATCCCGGGGGTCGCCGGATCCTT 9723 || |||||||||||||||||| ||| || |||||| ||| ||| |||||||| ||| || Sbjct 68 GGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT 9 Query 9724 aaaaaaaa 9731 |||||||| Sbjct 8 AAAAAAAA 1 >seq838048 Length=231 Score = 78.8 bits (86), Expect = 6e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 9664 GGGGATCGGAAGAGCGTCGTGGCGGGGAAAAGTGTAAATCCCGGGGGTCGCCGGATCCTT 9723 || |||||||||||||||||| ||| || |||||| ||| ||| |||||||| ||| || Sbjct 68 GGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT 9 Query 9724 aaaaaaaa 9731 |||||||| Sbjct 8 AAAAAAAA 1 >seq837797 Length=228 Score = 78.8 bits (86), Expect = 6e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 9664 GGGGATCGGAAGAGCGTCGTGGCGGGGAAAAGTGTAAATCCCGGGGGTCGCCGGATCCTT 9723 || |||||||||||||||||| ||| || |||||| ||| ||| |||||||| ||| || Sbjct 68 GGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT 9 Query 9724 aaaaaaaa 9731 |||||||| Sbjct 8 AAAAAAAA 1 >seq833864 Length=247 Score = 78.8 bits (86), Expect = 6e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 9664 GGGGATCGGAAGAGCGTCGTGGCGGGGAAAAGTGTAAATCCCGGGGGTCGCCGGATCCTT 9723 || |||||||||||||||||| ||| || |||||| ||| ||| |||||||| ||| || Sbjct 68 GGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT 9 Query 9724 aaaaaaaa 9731 |||||||| Sbjct 8 AAAAAAAA 1 >seq828349 Length=232 Score = 78.8 bits (86), Expect = 6e-11 Identities = 57/66 (86%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 9666 GGATCGGAAGAGCGTCGTGGCGGGGAAAAGTGTAAATCCCGGGGGTCGCCGGATCCTTaa 9725 ||||||||||||||||||| ||| || |||||| ||| ||| |||||||| ||| |||| Sbjct 66 GGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAA 7 Query 9726 aaaaaa 9731 |||||| Sbjct 6 AAAAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30539411051408