Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq2898 141 4e-30 seq1752 141 4e-30 seq52 78.8 4e-11 >seq2898 Length=27705 Score = 141 bits (156), Expect = 4e-30 Identities = 102/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | |||| ||||| | || ||||||| Sbjct 21316 TTTATGATACTATGCAATTTGTGCCACCCGATGTGCATACAATATGCATGGGGTTAGCCG 21375 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||| ||||||||| | || ||| |||||||||||||||||||||||||||||||||| Sbjct 21376 CTTCTATGGGATCTTTCATTCTGATCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 21433 >seq1752 Length=58896 Score = 141 bits (156), Expect = 4e-30 Identities = 102/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | |||| ||||| | || ||||||| Sbjct 54512 TTTATGATACTATGCAATTTGTGCCACCCGATGTGCATACAATATGCATGGGGTTAGCCG 54453 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||| ||||||||| | || ||| |||||||||||||||||||||||||||||||||| Sbjct 54452 CTTCTATGGGATCTTTCATTCTGATCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 54395 >seq52 Length=719662 Score = 78.8 bits (86), Expect = 4e-11 Identities = 88/118 (75%), Gaps = 6/118 (5%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| || || | || | ||||| | || ||||| | Sbjct 614907 TTTATGATACTATGCAATTTGTGCCACGCGATGCGCATAAAATATGCATGGGGTTAGCTG 614848 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||| ||||||||| || || ||||||||||| |||| |||||||||||| Sbjct 614847 CTTATATGGGATCT------TTGATCAAAGGAGAAATTATCAAATATCTAGCATTCCC 614796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19040480587200