Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq5 84.2 8e-13 >seq5 Length=20131956 Score = 84.2 bits (92), Expect = 8e-13 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 1 CTTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCC 60 |||| |||||| ||||||| ||| |||||| || |||| ||||| | ||| |||| Sbjct 17251357 CTTTTTGATACGATGCAAACGGTGACACCAGATATATATACAATATGCCTCGGAATAGCT 17251298 Query 61 GCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 || || |||| || | || ||| ||||||||||| ||||| ||| |||||||||| Sbjct 17251297 GCATCCATGGCGTCCTTCATTCTGCTCGGAGGAGAACCGACCAAGCGTATAGCATTCCC 17251239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19045881074880