Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq4 86.0 4e-13 seq4454 80.6 2e-11 seq1290 80.6 2e-11 seq5 80.6 2e-11 seq7 78.8 5e-11 >seq4 Length=49548238 Score = 86.0 bits (94), Expect = 4e-13 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 45119831 GCCCGTGTCAGCCTTTTATCTAATAAATGCGTCCCTCCCAGAAGTCGGGGTTTGTTGCAC 45119890 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 45119891 GTATTAGCTCT 45119901 >seq4454 Length=1743 Score = 80.6 bits (88), Expect = 2e-11 Identities = 62/71 (87%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||| ||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 779 GCCCGCGTTAGCCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCAC 838 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 839 GTATTAGCTCT 849 >seq1290 Length=6132 Score = 80.6 bits (88), Expect = 2e-11 Identities = 62/71 (87%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||| ||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 4445 GCCCGCGTTAGCCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCAC 4386 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 4385 GTATTAGCTCT 4375 >seq5 Length=59822759 Score = 80.6 bits (88), Expect = 2e-11 Identities = 62/71 (87%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||| ||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 46930489 GCCCGCGTTAGCCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCAC 46930430 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 46930429 GTATTAGCTCT 46930419 >seq7 Length=46770411 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Plus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 1068478 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 1068537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28403783344464