Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq66211 143 1e-30 seq40277 104 9e-19 seq144205 100 1e-17 seq139774 96.9 1e-16 seq126097 93.3 2e-15 seq124680 91.5 6e-15 seq77553 91.5 6e-15 >seq66211 Length=133537 Score = 143 bits (158), Expect = 1e-30 Identities = 102/117 (87%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 3 TTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGC 62 |||||||||||||||| ||||| ||||| | | | |||| |||| | ||||||||||| Sbjct 19828 TTATGATACTATGCAATTTGTGTTACCATATGTACATACAATATGTATGGGATTAGCCGC 19887 Query 63 TTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||| | || ||||||||||||||||||||||||||| |||||||||| Sbjct 19888 TTCAATGGGATCTTTCATTCTGGTCGGAGGAGAAATTACCAAACGTGTAGCATTCCC 19944 >seq40277 Length=13304 Score = 104 bits (114), Expect = 9e-19 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| ||||||||||||| | | ||| |||| | |||||||||| Sbjct 6042 TTTATGATACTATGCAATTTGTGCTACCAGATGTACACACAATATGTATGGGATTAGCCG 6101 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAG 91 |||||||||||||| | || |||||||||| Sbjct 6102 CTTCAATGGGATCTTTCATTCTGGTCGGAG 6131 >seq144205 Length=416181 Score = 100 bits (110), Expect = 1e-17 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 52 GGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTA 111 |||||||||||||||||| ||||| | || |||||||||||||||||||||||||||||| Sbjct 200891 GGATTAGCCGCTTCAATGAGATCTTTCATTCTGGTCGGAGGAGAAATTACCAAACGTCTA 200832 Query 112 GCATTCCC 119 ||||| || Sbjct 200831 GCATTTCC 200824 >seq139774 Length=70636 Score = 96.9 bits (106), Expect = 1e-16 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 52 GGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTA 111 |||||||||||||||||| ||| | | || |||||||||||||||||||||||||||||| Sbjct 42095 GGATTAGCCGCTTCAATGAGATTTTTCATTCTGGTCGGAGGAGAAATTACCAAACGTCTA 42036 Query 112 GCATTCCC 119 ||||| || Sbjct 42035 GCATTTCC 42028 Score = 82.4 bits (90), Expect = 3e-12 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 52 GGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTA 111 |||||||||||||||||| ||| | | || ||||||||| |||||||| |||||||||| Sbjct 34846 GGATTAGCCGCTTCAATGAGATTTTTCATTCTGGTCGGAAAAGAAATTAACAAACGTCTA 34787 Query 112 GCATTCCC 119 ||||| || Sbjct 34786 GCATTTCC 34779 Score = 82.4 bits (90), Expect = 3e-12 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 52 GGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTA 111 |||||||||||||||||| ||| | | || ||||||||| |||||||| |||||||||| Sbjct 38743 GGATTAGCCGCTTCAATGAGATTTTTCATTCTGGTCGGAAAAGAAATTAACAAACGTCTA 38684 Query 112 GCATTCCC 119 ||||| || Sbjct 38683 GCATTTCC 38676 >seq126097 Length=6982 Score = 93.3 bits (102), Expect = 2e-15 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 44 TATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCA 103 |||| | |||||||| |||||||||| |||| | || |||||||||||||||||||||| Sbjct 6472 TATGTATGGGATTAGCTGCTTCAATGGAATCTTTCATTCTGGTCGGAGGAGAAATTACCA 6413 Query 104 AACGTCTAGCATTCCC 119 || ||| ||||||||| Sbjct 6412 AATGTCCAGCATTCCC 6397 >seq124680 Length=5919 Score = 91.5 bits (100), Expect = 6e-15 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||| ||||||||| ||||| ||| || | | |||| |||| | || ||||||| Sbjct 5729 TTTATGAGACTATGCAATTTGTGTCACCGGATGTACATACAATATGTATGGGTTTAGCCG 5788 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAG 94 |||||||||||||| | || ||||||||||||| Sbjct 5789 CTTCAATGGGATCTTTCATTCTGGTCGGAGGAG 5821 >seq77553 Length=1476 Score = 91.5 bits (100), Expect = 6e-15 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||| |||||| ||||| ||||||| | | | | || | ||||||| Sbjct 849 TTTATGATACAATGCAATTTGTGTTACCAGATGTACATTTAACATCTATGAAATTAGCCC 908 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| ||| | | || ||||||| || ||||||| ||||||||||||||||||| Sbjct 909 TTTCAATGAGATTTTTCATTCTGGTCGAAGAAGAAATTGCCAAACGTCTAGCATTCCC 966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19015329280320