Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_030697.1 Length=9808 Score E Sequences producing significant alignments: (Bits) Value seq1206516 82.4 5e-12 seq453067 78.8 6e-11 >seq1206516 Length=336 Score = 82.4 bits (90), Expect = 5e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 9647 ATCTACGCGTGAGTGAGGGG-GATCGGAAGAGCGTCGTGGCGGGGAAAAGTGTAAATCCC 9705 ||||| ||| ||| |||| | |||||||||||||||||| ||| || |||||| ||| | Sbjct 254 ATCTA-GCGGGAGAGAGGAGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTC 312 Query 9706 GGGGGTCGCCGGATCCTTAAAAAA 9729 || |||||||| ||| |||||||| Sbjct 313 GGTGGTCGCCGTATCATTAAAAAA 336 >seq453067 Length=423 Score = 78.8 bits (86), Expect = 6e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 9662 AGGGGGATCGGAAGAGCGTCGTGGCGGGGAAAAGTGTAAATCCCGGGGGTCGCCGGATCC 9721 |||| |||||||||||||||||| ||| || |||||| ||| ||| |||||||| ||| Sbjct 68 AGGGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCA 9 Query 9722 TTAAAAAA 9729 |||||||| Sbjct 8 TTAAAAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30713968131056