Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq216 78.8 5e-11 seq161 78.8 5e-11 seq145 78.8 5e-11 seq6 78.8 5e-11 >seq216 Length=46344 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 34415 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 34356 >seq161 Length=69060 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Plus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 19453 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 19512 >seq145 Length=60070 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 2434 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 2375 >seq6 Length=174033170 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Plus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 14295457 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 14295516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28406314674276