Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq2415 154 6e-34 seq5746 132 2e-27 seq2428 132 2e-27 seq5085 123 9e-25 seq1552 123 9e-25 seq1831 113 2e-21 seq3426 109 2e-20 >seq2415 Length=32648 Score = 154 bits (170), Expect = 6e-34 Identities = 105/118 (89%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | |||||| | | ||| ||||| | |||||||||| Sbjct 1628 TTTATGATACTATGCAATTTGTTCAACCAGACGTACAAACAATATGCATGGGATTAGCCG 1687 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 1688 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 1745 >seq5746 Length=162686 Score = 132 bits (146), Expect = 2e-27 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||| |||||||| |||| | ||||| | | ||| ||||| | |||||||||| Sbjct 77538 TTTATGACGCTATGCAATTTGTACCGCCAGACGTACATACGATATGCATGGGATTAGCCG 77479 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| Sbjct 77478 CTTCAATGGGATCTTTCGTCCTGGCCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 77421 >seq2428 Length=3105707 Score = 132 bits (146), Expect = 2e-27 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||| |||||||| |||| | ||||| | | ||| ||||||| |||||||||| Sbjct 186724 TTTATGATGCTATGCAATTTGTACCGCCAGACCTACATACGATATGCGTGGGATTAGCCG 186665 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| | |||||||||||||||||||||||||| | |||||| |||| Sbjct 186664 CTTCAATGGGATCTTTCGTCCTGGTCGGAGGAGAAATTACCAAATGACTAGCAGTCCC 186607 >seq5085 Length=15980527 Score = 123 bits (136), Expect = 9e-25 Identities = 98/118 (83%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||| |||||||| |||| | |||||| | | ||| ||||| | |||| |||| Sbjct 13505767 TTTATGACGCTATGCAATTTGTACCACCAGACGTACATACGATATGCATGAGATTGGCCG 13505708 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| | ||||||| ||||||||||||||||||||||| |||||||| Sbjct 13505707 CTTCAATGGGATCTTTCATCCTGGCTGGAGGAGAAATTACCAAACGTCTTGCATTCCC 13505650 >seq1552 Length=8757819 Score = 123 bits (136), Expect = 9e-25 Identities = 98/118 (83%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||| ||||||||| |||| || ||||| | | ||| ||||| | || ||||| Sbjct 3150892 TTTATGACACTATGCAATTTGTACTGCCAGACGTGCATACGATATGCATGGGTTTAGCGA 3150951 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||| || || ||||| ||||||||||||||||||||||||||||||| Sbjct 3150952 TTTCAATGGGATCTTTTGTCTTGGTCAGAGGAGAAATTACCAAACGTCTAGCATTCCC 3151009 Score = 78.8 bits (86), Expect = 4e-11 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 57 AGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATT 116 || || ||||||||||||| | |||||||| |||||||| |||||||||||||| |||| Sbjct 7121209 AGTCGTTTCAATGGGATCTTTCGTCCTGGTCAGAGGAGAACTTACCAAACGTCTAACATT 7121268 Query 117 CCC 119 ||| Sbjct 7121269 CCC 7121271 >seq1831 Length=4552514 Score = 113 bits (124), Expect = 2e-21 Identities = 92/112 (82%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||| |||||||| ||| || ||||| | | ||| ||||| | |||| | ||| Sbjct 1736032 TTTATGACGCTATGCAATCTGTACTGCCAGAGGTACATACGATATGCTTGGGATCACCCG 1735973 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGC 113 |||||||||||||| || || ||||||||||||||||||||||| ||||||| Sbjct 1735972 CTTCAATGGGATCTTTTGTCTTGGTCGGAGGAGAAATTACCAAAAGTCTAGC 1735921 >seq3426 Length=3004207 Score = 109 bits (120), Expect = 2e-20 Identities = 95/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||| |||||||| |||| | ||| | | | ||| ||||| | |||||||| Sbjct 2067577 TTTATGACGCTATGCAATTTGTACCACCCAACGTACATACGATATGCATGGGATTAGCTA 2067636 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| | || ||| |||| |||||||||||||||||||||||||||| Sbjct 2067637 CTTCAATGGGATCTTTAGTCTTGGCCGGATGAGAAATTACCAAACGTCTAGCATTCCC 2067694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19045202993280